SNP Profiles matching DOM 4

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
1._RUQ_936	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
2._ICS_48	_	_	CC	TT	CC	_	AA	CC	AG	CT	_	_	AA	_
3._GC-05-077-2-28	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
4._GC-05-077-2-28	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
5._GC-05-077-2-28	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
6._GC-05-077-2-28	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
7._GC-05-077-2-28	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
8._GC-05-078-2-29	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
9._RUQ_678	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
10._RUQ_553	TT	CC	CC	TT	CC	GG	AA	CC	AA	-	GG	GG	AA	-

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG	CC
1._RUQ_936	AA	CC	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG	CC
2._ICS_48	AA	CC	TT	CG	CC	_	TT	_	GT	_	_	_	GG	_
3._GC-05-077-2-28	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
4._GC-05-077-2-28	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
5._GC-05-077-2-28	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
6._GC-05-077-2-28	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
7._GC-05-077-2-28	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
8._GC-05-078-2-29	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
9._RUQ_678	AA	CC	TT	GG	CC	TT	TT	TT	GG	GG	TT	CC	GG	CC
10._RUQ_553	-	CC	-	GG	AA	TT	TT	TT	GG	-	TT	-	-	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
1._RUQ_936	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
2._ICS_48	CC	AA	_	CC	_	_	_	TT	_	_	CT	GG	AA	X_X
3._GC-05-077-2-28	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
4._GC-05-077-2-28	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
5._GC-05-077-2-28	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
6._GC-05-077-2-28	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
7._GC-05-077-2-28	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
8._GC-05-078-2-29	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
9._RUQ_678	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
10._RUQ_553	CC	AA	-	CC	GG	-	TT	TT	TT	-	-	GG	AA	X_X

Input profile: DOM_4 RUQ_544

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._CERRO_AZUL_10 RUQ_936

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_48

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

3._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

5._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

7._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._ICS_48 GC-05-078-2-29

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._LCT_EEN_62_/S-4 RUQ_678

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._GDL_3 RUQ_553

91.7 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484